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Phylogenomic Analysis and Gene Organization of Mitogenome from Mong Cai Pig in Vietnam


Affiliations
1 Institute of Genome Research, Vietnam Academy of Science and Technology, Hanoi 1000000, Viet Nam
2 Institute of Forensic Science, 99, Nguyen Tuan, Thanh Xuan, Hanoi 100000, Viet Nam
 

Mong Cai pig (Sus scrofa) is the Vietnamese indigenous pig breed. The complete mitogenome of this breed has been sequenced and characterized. It is deposited in GenBank with accession number KX147100. There were 37 genes (13 protein-coding, 2 rRNA, 22 tRNA genes and a control (D loop) region) located in 16,711 bp of complete mitogenome. The phylogenetic relationships of both mitogenome and D loop region revealed the shortest genetic distance with Lantang pig breeds and close relationship to some other pig breeds in China regions. Taken together, the valuable data provide essential information for genetic and phylogenetic studies in Vietnamese indigenous animal.

Keywords

Genetic Distance, Mitochondrial-Genome, Mong Cai Pig, Phylogenetic Relationships.
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  • Phylogenomic Analysis and Gene Organization of Mitogenome from Mong Cai Pig in Vietnam

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Authors

Thuy Thi Bich Vo
Institute of Genome Research, Vietnam Academy of Science and Technology, Hanoi 1000000, Viet Nam
Hieu Duc Nguyen
Institute of Genome Research, Vietnam Academy of Science and Technology, Hanoi 1000000, Viet Nam
Tuan Anh Bui
Institute of Forensic Science, 99, Nguyen Tuan, Thanh Xuan, Hanoi 100000, Viet Nam
Binh Thi Nguyen Le
Institute of Genome Research, Vietnam Academy of Science and Technology, Hanoi 1000000, Viet Nam
Minh Ngoc Nghiem
Institute of Genome Research, Vietnam Academy of Science and Technology, Hanoi 1000000, Viet Nam
Hai Van Nong
Institute of Genome Research, Vietnam Academy of Science and Technology, Hanoi 1000000, Viet Nam

Abstract


Mong Cai pig (Sus scrofa) is the Vietnamese indigenous pig breed. The complete mitogenome of this breed has been sequenced and characterized. It is deposited in GenBank with accession number KX147100. There were 37 genes (13 protein-coding, 2 rRNA, 22 tRNA genes and a control (D loop) region) located in 16,711 bp of complete mitogenome. The phylogenetic relationships of both mitogenome and D loop region revealed the shortest genetic distance with Lantang pig breeds and close relationship to some other pig breeds in China regions. Taken together, the valuable data provide essential information for genetic and phylogenetic studies in Vietnamese indigenous animal.

Keywords


Genetic Distance, Mitochondrial-Genome, Mong Cai Pig, Phylogenetic Relationships.

References





DOI: https://doi.org/10.18520/cs%2Fv116%2Fi9%2F1566-1571