Open Access
Subscription Access
Black Palm Squirrel (Funambulus palmarum Linn.) from India: Association with a Frame Shift Mutation in the MC1R Gene
This study shows that the dominant mutation of Extension locus in the recessive locus of the agouti Indian three-striped palm squirrel results in constituting an active or hyperactive receptor. This is not inhibited by the agouti antagonist or agouti signalling protein, resulting in melanism. To the best of our knowledge, there is no earlier report of a melanic variant (black) of a three-striped palm squirrel (Funambulus palmarum Linn.) from India. The colour change is due to mutation and is traced to melanocortin-1 receptor (MC1R) gene, where it is proved to be a sequence alteration causing a frame shift in the Extension locus of the wild type. This would have probably caused the constitutive activation of MC1R.
Keywords
Agouti Signalling Protein, Dominant Mutation, Funambulus palmarum, Melanism, Melanocortin-1 Receptor.
User
Font Size
Information
- McRobie, H., Moncrief, D. N. and Mundy, I. N., Multiple origins of melanism in two species of North American tree squirrel (Sciurus). BMC Evol. Biol., 2019, 19(140), 1471–1477.
- Lin, J. and Fisher, D., Melanocyte biology and skin pigmentation. Nature, 2007, 445, 843–850.
- D’Mello, S. A. N., Finlay, G. J., Baguley, B. C. and AskarianAmiri, M. E., Signaling pathways in melanogenesis. Int. J. Mol. Sci., 2016, 17, 1144.
- McRobie, H., Thomas, A. and Kelly, J., The genetic basis of melanism in the gray squirrel (Sciurus carolinensis). J. Hered., 2009, 100, 709–714.
- Almathen, F., Elbir, H., Bahbahani, H., Mwacharo, J. and Hanotte, O., Polymorphisms in MC1R and ASIP genes are associated with coat color variation in the Arabian camel. J. Hered., 2018, 6(109), 700–706.
- Altschul, S. F., Gish, W., Miller, W., Myers, W. E. and Lipman, J. D., Basic local alignment search tool. J. Mol. Biol., 1990, 215, 403–410.
- Kumar, S., Tamura, K. and Nei, M., MEGA: molecular evolutionary genetics analysis software for microcomputers. Comput. Appl. Biosci., 1994, 10, 189–191.
- Ambrish, R., Alper, K. and Yang, Z., I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protoc., 2010, 5, 725–738.
- Laskoswki, R. A., MacArthur, M. W., Moss, D. S. and Thorton, J. M., PROCHECK: a program to check the stereo-chemical quality of protein structures. J. Appl. Crystallogr., 1993, 26, 283–291.
- Hooft, R. W. W., Vriend, G., Sander, C. and Abola, E. E., Errors in protein structures. Nature, 1996, 381, 272.
- Colovos, C. and Yeates, T. O., Verification of protein structures: patterns of non-bonded atomic interactions. Protein Sci., 1993, 2, 1511–1519.
- Luthy, R., Bowie, J. U. and Eisenberg, D., Assessment of protein models with three-dimensional profiles. Nature, 1992, 356, 83–85.
- Pontius, J., Richelle, J. and Wodak, S. J., Deviations from standard atomic volumes as a quality measure for protein crystal structures. J. Mol. Biol., 1996, 264, 121–136.
- Guex, N. and Peitsch, M. C., SWISS-MODEL and the Swiss Pdb Viewer: an environment for comparative protein modeling. Electrophoresis, 1997, 18, 2714–2723.
- Holm, L. and Rosenstrom, P., Dali server: conservation mapping in 3D. Nucleic Acids Res., 2010, 38, W545–W549.
- Joe, D., Zheng, O., Jeffery, T., Andrew, B., Yaron, T. and Jie, L., CASTp: computed ATAS of surface topography of proteins with structural and topographical mapping of functionally annotated residues. Nucleic Acids Res., 2006, 34, W116–W118.
- Chen, R., Li, L. and Weng, Z. P., ZDOCK: an initial-stage protein-docking algorithm. Proteins, 2003, 52(1), 80–87.
- Mashiach, E., Schneidman-Duhovny, D., Andrusier, N., Nussinov, R. and Wolfson, J. H., FireDock: a web server for fast interaction refinement in molecular docking. Nucleic Acids Res., 2008, 36, W229–W232.
- Zalfa, A., Scott, C. M., Furumura, M., Lamoreux, L. M., Ollmann, M., Barsh, S. G. and Hearing, J. M., The melanocortin 1 receptor is the principal mediator of the effects of agouti signaling protein on mammalian melanocytes. J. Cell Sci., 2001, 114, 1019–1024.
- Patel, M. P., Cribb Fabersunne, S. C., Yang, Y., Kaelin, B. C., Barsh, S. G. and Mullhauser, L. G., Loop swapped chimeras of agouti related protein (AgRP) and agouti signaling protein (ASIP) identify contacts required for melanocortin 1 receptor (MC1R) selectivity and antagonism. J. Mol. Biol., 2010, 404, 45–55.
- McNulty, J. C. et al., Structures of the agouti signaling protein. J. Mol. Biol., 2005, 346, 1059–1070.
Abstract Views: 393
PDF Views: 128