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On The Use Of Lacunarity Analysis Of Cgr Images For Metagenomic Classification


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1 New Horizon College of Engineering, Bangalore, India
 

Metagenomic projects collect DNA from uncharacterized environments that may contain thousands of species per sample. Because the output from metagenomic sequencing is a large set of reads of unknown origin, clustering reads together that were sequenced from the same species is a crucial analysis step . This paper compares the the use of lacunarity analysis of the Chaos Game Representation of metagenomic sequences of various lengths.. It demonstrates the efficiency of lacunarity analysis for shorter nucleotide sequences.

Keywords

Metagenomes, Chaos Game Representation, Lacunarity, Gliding Box Algorithm.
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  • On The Use Of Lacunarity Analysis Of Cgr Images For Metagenomic Classification

Abstract Views: 168  |  PDF Views: 0

Authors

Aiswarya Prasad
New Horizon College of Engineering, Bangalore, India

Abstract


Metagenomic projects collect DNA from uncharacterized environments that may contain thousands of species per sample. Because the output from metagenomic sequencing is a large set of reads of unknown origin, clustering reads together that were sequenced from the same species is a crucial analysis step . This paper compares the the use of lacunarity analysis of the Chaos Game Representation of metagenomic sequences of various lengths.. It demonstrates the efficiency of lacunarity analysis for shorter nucleotide sequences.

Keywords


Metagenomes, Chaos Game Representation, Lacunarity, Gliding Box Algorithm.