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What are the Differently Paired Forms of Adenine (A)-Thymine (T)?


Affiliations
1 Department of Chemistry, Cotton College, Assam, India
2 Department of Chemical Science, GUIST, Assam, India
3 Department of Chemistry, Assam Engineering College, India
4 Department of Chemistry, Gauhati University, Assam, India
5 Department of Chemistry, Gauhati University, India
 

Some tautomers of adenine (A) and thymine (T) are selected to study the existence of differently paired TA pairs unlike Watson Crick (WC) AT. In this investigation DFT (B3LYP/6-31+G (d,p)) calculations are carried out to obtain the optimum structures of all tautomers and tautomer TA pairs. Schematic studies have been performed to analyse how the effect of proton on basic sites of A and T can destabilize the Watson Crick (WC) AT. Certain basic sites of A and T acquire strong affinity for proton that may lead to destabilization of hydrogen bonds in WC AT. Several tautomer TA pairs formed due to paring of A and T tautomers through H-bonding in a different manner are found quite stable. These tautomer TA pairs are formed through hydrogen bonding between compatible counter tautomers. So, destabilization of WC AT usually generates less stable tautomers of A and T, which in turn may combine to form quite stable tautomer TA pairs. Moreover, direct reaction pathways from WC AT to tautomer TA pairs are not feasible, since the reaction pathways pass through high energy barriers.


Keywords

Nucleobases, Tautomers, DFT, Base Pair, Hydrogen Bonds.
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  • What are the Differently Paired Forms of Adenine (A)-Thymine (T)?

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Authors

R. P. Deka
Department of Chemistry, Cotton College, Assam, India
J. Basumatary
Department of Chemical Science, GUIST, Assam, India
T. K. Barman
Department of Chemistry, Assam Engineering College, India
J. Deka
Department of Chemistry, Gauhati University, Assam, India
C. Medhi
Department of Chemistry, Gauhati University, India

Abstract


Some tautomers of adenine (A) and thymine (T) are selected to study the existence of differently paired TA pairs unlike Watson Crick (WC) AT. In this investigation DFT (B3LYP/6-31+G (d,p)) calculations are carried out to obtain the optimum structures of all tautomers and tautomer TA pairs. Schematic studies have been performed to analyse how the effect of proton on basic sites of A and T can destabilize the Watson Crick (WC) AT. Certain basic sites of A and T acquire strong affinity for proton that may lead to destabilization of hydrogen bonds in WC AT. Several tautomer TA pairs formed due to paring of A and T tautomers through H-bonding in a different manner are found quite stable. These tautomer TA pairs are formed through hydrogen bonding between compatible counter tautomers. So, destabilization of WC AT usually generates less stable tautomers of A and T, which in turn may combine to form quite stable tautomer TA pairs. Moreover, direct reaction pathways from WC AT to tautomer TA pairs are not feasible, since the reaction pathways pass through high energy barriers.


Keywords


Nucleobases, Tautomers, DFT, Base Pair, Hydrogen Bonds.