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Herman Van Eck, I. R. H. J.
- Identification of Candidate Markers Associated with Frying Colour Trait of Potato
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Authors
Affiliations
1 Department of Agricultural Botany, College of Agriculture (M.P.K.V.), Baramati (M.S.), IN
2 Laboratory of Plant Breeding, Plant Sciences Group, Wageningen University and Research Center, NL
1 Department of Agricultural Botany, College of Agriculture (M.P.K.V.), Baramati (M.S.), IN
2 Laboratory of Plant Breeding, Plant Sciences Group, Wageningen University and Research Center, NL
Source
International Journal of Plant Sciences, Vol 11, No 2 (2016), Pagination: 291-298Abstract
The demand for potato products like chips and French fries is steadily increasing all over the world. Consumers and potato processing industries have become more stringent for quality along with higher demand of products. Hence, potato breeders are stimulated to develop new potato cultivars with more emphasis on quality traits. Potato breeding is mainly based on crossing two heterozygous parents or complementary parental clones and multi-year clonal selection to identify candidate cultivars with excellent quality. Hence, modern breeders like to use DNA/molecular markers to speed up the selection process by screening large numbers of genotypes at a time. To end up with a shortlist of candidate markers, three criteria; consistency, redundancy and multiple testing corrections were used for removal of false positive and redundant associations. In total, 62 marker-trait associations for frying colour were found to be informative after consistency over several sub traits with threshold level>3.3 in at least three sub traits. Finally, replacement analysis was performed to replace unmapped markers with mapped markers. 22 markers for frying colour trait were selected as a set of marker which could be used in Marker assisted breeding. It is clear that statistical approach provides a quick way of analyzing vast amounts of marker-trait associations to end up with short list of candidate markers. However, conformation is still needed to validate the markers.Keywords
Potato, Candidate Markers, Marker Assisted Selection, Marker-Trait Associations, Frying Colour etc.
References
- Bradshaw, J., Hackett, C., Pande, B., Waugh, R. and Bryan, G. (2008). Qtl mapping of yield, agronomic and quality traits in tetraploid potato (solanum tuberosum subsp tuberosum). TAG Theoretical & Appl. Genet., 116(2): 193-211.
- Brugmans, B., van der Hulst, R.G.M., Visser, R.G.F., Lindhout, P. and van Eck, H.J. (2003). A new and versatile method for the successful conversion of aflp™ markers into simple single locus markers. Nucleic Acids Res., 31(10) : e55.
- Burton, W. (1969). The sugar balance in some british potato varieties during storage. Ii. The effects of tuber age, previous storage temperature, and intermittent refrigeration upon low-temperature sweetening. Potato Res., 12(2) : 81-95.
- Cho, K. and Dupuis, J. (2009). Handling linkage disequilibrium in qualitative trait linkage analysis using dense snps: A two-step strategy. BMC Genet., 10(1): 44.
- Coffin, R., Yada, R., Parkin, K., Grodzinski, B. and Stanley, D. (1987). Effect of low temperature storage on sugar concentrations and chip colour of certain processing potato cultivars and selections. J. Food Sci., 52(3): 639-645.
- Cunningham, C. and Stevenson, F. (1963) Inheritance of factors affecting potato chip colour and their association with specific gravity. American J. Potato Res., 40(8): 253-265.
- D’hoop, B.B. (2009). Marker-trait associations in potato. Association mapping in tetraploid potato, Ph.D. Thesis, Wageningen University, The Netherlands, 71-87pp.
- D’hoop, B.B., Paulo, M., Kowitwanich, K., Sengers, M., Visser, R., van Eck, H. and van Eeuwijk, F. (2010). Population structure and linkage disequilibrium unravelled in tetraploid potato. TAG Theoretical & Appl. Genet., 121(6) : 1151-1170.
- Dejong, H. (1983). Inheritance of sensitivity to the herbicide metribuzin in cultivated diploid potatoes. Euphytica, 32(1) : 41-48.
- Gebhardt, C., Li, L., Pajerowska-Mukthar, K., Achenbach, U., Sattarzadeh, A., Bormann, C., Ilarionova, E. and Ballvora, A. (2007). Candidate gene approach to identify genes underlying quantitative traits and develop diagnostic markers in potato.
- Gould, W., Hair, B. and Baroudi, A. (1979). Evaluation of potato cultivars before and after storage regimes for chipping. American J. Potato Res., 56(3): 133-144.
- Hope, G., MacKay, D. and Townsend, L. (1960). The effect of harvest date and rate of nitrogen fertilization on the maturity, yield and chipping quality of potatoes. American J. Potato Res., 37(1) : 28-33.
- Li, L., Paulo, M.J., Strahwald, J., Lübeck, J., Hofferbert, H.-R., Tacke, E., Junghans, H., Wunder, J., Draffehn, A., van Eeuwijk, F. and Gebhardt, C. (2008). Natural DNA variation at candidate loci is associated with potato chip colour, tuber starch content, yield and starch yield. TAG Theoretical & Appl. Genet., 116(8): 1167-1181.
- Li, L., Strahwald, J., Hofferbert, H.R., Lubeck, J., Tacke, E., Junghans, H., Wunder, J. and Gebhardt, C. (2005). DNA variation at the invertase locus invge/gf is associated with tuber quality traits in populations of potato breeding clones. Genet., 170(2) : 813-821.
- Menendez, C.M., Ritter, E., Schafer-Pregl, R., Walkemeier, B., Kalde, A., Salamini, F. and Gebhardt, C. (2002). Cold sweetening in diploid potato: Mapping quantitative trait loci and candidate genes.Genetics, 162(3) : 1423-1434.
- Nielsen, D.M., Suchindran, S. and Smith, C.P. (2008). Does strong linkage disequilibrium guarantee redundant association results? Genet. Epidemiol., 32(6): 546-552.
- Ooi, C., Chetty, M. and Teng, S. (2006). Differential prioritization between relevance and redundancy in correlation-based feature selection techniques for multiclass gene expression data. BMC Bioinformat., 7(1): 320.
- Pereira, A.D.S., Tai, G.C.C., Yada, R.Y., Tarn, T.R., SouzaMachado, V. and Coffin, R.H. (1994). Effect of selection for chip colour on some economic traits of potatoes. Plant Breed., 113(4) : 312-317.
- Stevenson, F. and Cunningham, C. (1961). Chip colour in relation to potato storage. American J. Potato Res., 38(4): 105-113.
- Tatonetti, N., Dudley, J., Sagreiya, H., Butte, A. and Altman, R. (2010). An integrative method for scoring candidate genes from association studies: Application to warfarin dosing. BMC Bioinformat., 11(Suppl 9): S9.
- Visser, R., Bachem, C., de Boer, J., Bryan, G., Chakrabati, S., Feingold, S., Gromadka, R., van Ham, R., Huang, S., Jacobs, J., Kuznetsov, B., de Melo, P., Milbourne, D., Orjeda, G., Sagredo, B. and Tang, X. (2009). Sequencing the potato genome: Outline and first results to come from the elucidation of the sequence of the world’s third most important food crop. American J. Potato Res., 86(6): 417-429.
- Zhang, N., Xu, Y., Akash, M., McCouch, S. and Oard, J.H. (2005). Identification of candidate markers associated with agronomic traits in rice using discriminant analysis. TAG Theoretical & Appl. Genetics, 110(4): 721-729.