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Docking Analysis of Potent Inhibitors of β-ketoacyl-acyl Carrier Protein Synthase III as Potential Antimicrobial Agents


Affiliations
1 Dept. of. Pharmaceutical Chemistry, Grace College of Pharmacy, Palakkad-678004
2 Dept. of. Pharmaceutical Chemistry, Sri Ramakrishna Institute of Paramedical Sciences -Coimbatore
     

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According to data of the World Health Organization, Tuberculosis (TB) caused by Mycobacterium tuberculosis, is considered to be the most chronic communicable disease in the World especially in Asia and Africa. This situation was made worse by the emergence of multi drug resistant TB (MDR-TB) and the increasing number of HIV-positive TB cases. Worldwide, TB accounts for approximately one-fourth of HIV-related deaths and is the leading cause of death in HIV-infected adults in developing countries, thus an urgent need exists for the development of new antimycobacterial agents with a unique mechanism of action. Mycobacterium tuberculosis FabH, an essential enzyme in the mycolic acid biosynthetic pathway, is an attractive target for novel anti-tubercolosis agents. A series of pyrazolone linked with isonicotinic acid hydrazide were computationally designed and energy minimized. The molecular properties were calculated from suitable computational tools. These ligands were investigated for drug like properties by calculating Lipinski's rule of five using molinspiration. All of the derivatives showed a zero violations of the rule of 5 which indicates good bioavailability. The positive bioactivity score of the derivative were also in agreement with their probability of drug likeness. These compounds were docked into the active site of FabH, (PDB code-1HZP) using Argus lab docking software which showed good binding energy for the enzyme, when compared with the binding energies of standard drug isoniazid -6.17kcal/mol.) Among all the designed ligands, the ligand II and V showed more binding energy values (-8.68 and -8.86Kcal/mol) . In future we planned to synthesise these ligand and to screen for their anti TB activity.

Keywords

Molinspiration, Druglikeness, Argus Lab, Tuberculosis, FabH
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  • World Health Organization (WHO). Global Tuberculosis Control: A Short Update to the 2009 Report. WHO/HTM/TB/2009.426. WHO: Geneva, Switzerland, 2009. New address: P.J. Kocienski, School of Chemistry, University of Leeds, Leeds LS2 9JT, UK.
  • Nunn, P.; Williams, B.; Floyd, K.; Dye, C.; Elzinga, G.; Raviglione, M. Tuberculosis control in the era of HIV. Nat. Rev. Immunol. 2005, 5, 819–826.
  • World Health Organization (WHO). TB/HIV Fact Sheet 2009; WHO: Geneva, Switzerland, 2009.
  • Corbett, E.L.; Watt, C.J.; Walker, N.; Maher, D.; Williams, B.G.; Raviglione, M.C.; Dye, C.The growing burden of tuberculosis: Global trends and interactions with the HIV epidemic.Arch. Intern. Med. 2003, 163, 1009–1021.
  • World Health Organization (WHO). Global Tuberculosis Control-Epidemiology, Strategy, Financing; WHO: Geneva, Switzerland, 2007.
  • Jayakumar, A.; Tai, M.H.; Huang, W.Y.; AlFeel, W.; Hsu, M.; AbuElheiga, L.; Chirala, S.S.;Wakil, S.J. Human fatty acid synthase: Properties and molecular cloning. Proc. Natl. Acad. Sci. USA1995, 92, 8695–8699.
  • Chirala, S.S.; Huang, W.Y.; Jayakumar, A.; Sakai, K.; Wakil, S.J. Animal fatty acid synthase:Functional mapping and cloning and expression of the domain I constituent activities.Proc. Natl. Acad. Sci. USA 1997, 94, 5588–5593.
  • The Cord Factor: Structure, Biosynthesis and Application in Drug Research – Achilles Heel of Mycobacterium tuberculosis? Ayssar A. Elamin, Matthias Stehr and Mahavir Singh Department of Gene Regulation and Differentiation, Helmholtz Centre for Infection Research, Braunschweig Germa
  • Indian Journal of Chemistry vol 48B, Oct2009, p no: 1453-1456 10. Downloaded from http://www.acdlabs.com/resources/freeware/chemsketch/
  • Molinspiration Cheminformatics. Molinspiration. [Internet]. 2010 [cited 2011 Mar 26]. Available from: http://www.molinspiration.com/cgi-bin/properties
  • Research Collaboratory for Structural Bioinformatics. Protein Data Bank. [Internet]. 2011 [updated 2011 Mar 22; cited 2011 Mar 26]. Available from: http://www.pdb.org/
  • ArgusLab 4.0.1, Mark A. THOMPSON, Planaria Software LLC, Seattle, WA, Downloaded from http://www.arguslab.com

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  • Docking Analysis of Potent Inhibitors of β-ketoacyl-acyl Carrier Protein Synthase III as Potential Antimicrobial Agents

Abstract Views: 365  |  PDF Views: 2

Authors

C. Buvana
Dept. of. Pharmaceutical Chemistry, Grace College of Pharmacy, Palakkad-678004
M. Sukumar
Dept. of. Pharmaceutical Chemistry, Sri Ramakrishna Institute of Paramedical Sciences -Coimbatore
Sijamol
Dept. of. Pharmaceutical Chemistry, Grace College of Pharmacy, Palakkad-678004
Udhyakumri
Dept. of. Pharmaceutical Chemistry, Grace College of Pharmacy, Palakkad-678004
Hannath
Dept. of. Pharmaceutical Chemistry, Grace College of Pharmacy, Palakkad-678004

Abstract


According to data of the World Health Organization, Tuberculosis (TB) caused by Mycobacterium tuberculosis, is considered to be the most chronic communicable disease in the World especially in Asia and Africa. This situation was made worse by the emergence of multi drug resistant TB (MDR-TB) and the increasing number of HIV-positive TB cases. Worldwide, TB accounts for approximately one-fourth of HIV-related deaths and is the leading cause of death in HIV-infected adults in developing countries, thus an urgent need exists for the development of new antimycobacterial agents with a unique mechanism of action. Mycobacterium tuberculosis FabH, an essential enzyme in the mycolic acid biosynthetic pathway, is an attractive target for novel anti-tubercolosis agents. A series of pyrazolone linked with isonicotinic acid hydrazide were computationally designed and energy minimized. The molecular properties were calculated from suitable computational tools. These ligands were investigated for drug like properties by calculating Lipinski's rule of five using molinspiration. All of the derivatives showed a zero violations of the rule of 5 which indicates good bioavailability. The positive bioactivity score of the derivative were also in agreement with their probability of drug likeness. These compounds were docked into the active site of FabH, (PDB code-1HZP) using Argus lab docking software which showed good binding energy for the enzyme, when compared with the binding energies of standard drug isoniazid -6.17kcal/mol.) Among all the designed ligands, the ligand II and V showed more binding energy values (-8.68 and -8.86Kcal/mol) . In future we planned to synthesise these ligand and to screen for their anti TB activity.

Keywords


Molinspiration, Druglikeness, Argus Lab, Tuberculosis, FabH

References