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Indian Plant Virus Database - A Platform for Showcasing Research on Plant Viruses in India


Affiliations
1 Division of Crop Protection, Bioinformatics Centre, ICAR-Indian Institute of Spices Research, Kozhikode 673 012, India
2 Bioinformatics Centre, ICAR-Indian Institute of Spices Research, Kozhikode 673 012, India
 

Indian Plant Virus Database (IPVdb) (http://220.227.138.213/virusdb/) hosts information on plant viruses reported from India. To develop this, basic information on plant viruses, their occurrence, particle morphology, transmission, symptomatology and host range were collected and compiled from published literature. Sequence information corresponding to each of the virus species was gathered from the GenBank. The information assembled was organized as a searchable database using MySQL and PHP. In the home page of the database, a general outline about viruses, their history, taxonomy, transmission and management are provided. An alphabetical index of all virus species reported from India is also given in the home page along with their corresponding genera and family names. For each virus species entry, a brief introduction about the virus, its particle morphology, transmission, its natural host range, symptomatology and detection methods are given. Key references and all available sequences (both complete and partial) of each of the virus species are also provided. Selected sequences can be directly downloaded from the website in FASTA format for downstream analysis. Provision for BLAST analysis (Viro Blast) provided in the database will help researchers in quick identification of their samples.
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  • Sastry, K. S. and Saigopal, D. V. R., Compendium on Plant Virus, Phytoplasma and Viroid Diseases Research in India (1903-2008), Virology Publications, Tirupati, 2010, p. 782.

  • Nayudu, M. V., Plant Viruses, Tata McGraw-Hill, New Delhi, 2008, p. 1249.

  • Descriptions of Plant Viruses (DPV web), available online: http://www.dpvweb.net/

  • CAB Abstracts, available online: https://www.cabdirect.org/

  • Hull, R., Matthew’s Plant Virology, 4th edn, Academic Press, London, UK, 2002, p. 1001.

  • National Centre for Biotechnology Information, https://www.ncbi.nlm.nih.gov/nucleotide

  • International Committee on Taxonomy of Viruses (ICTV), Virus Taxonomy: 2014 Release, available online: http://www.ictvonline.org/virusTaxonomy.asp


Abstract Views: 432

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  • Indian Plant Virus Database - A Platform for Showcasing Research on Plant Viruses in India

Abstract Views: 432  |  PDF Views: 121

Authors

A. I. Bhat
Division of Crop Protection, Bioinformatics Centre, ICAR-Indian Institute of Spices Research, Kozhikode 673 012, India
Agath Martin
Bioinformatics Centre, ICAR-Indian Institute of Spices Research, Kozhikode 673 012, India
Arun John
Bioinformatics Centre, ICAR-Indian Institute of Spices Research, Kozhikode 673 012, India
Neethu Isaac
Bioinformatics Centre, ICAR-Indian Institute of Spices Research, Kozhikode 673 012, India
S. J. Eapen
Division of Crop Protection, Bioinformatics Centre, ICAR-Indian Institute of Spices Research, Kozhikode 673 012, India

Abstract


Indian Plant Virus Database (IPVdb) (http://220.227.138.213/virusdb/) hosts information on plant viruses reported from India. To develop this, basic information on plant viruses, their occurrence, particle morphology, transmission, symptomatology and host range were collected and compiled from published literature. Sequence information corresponding to each of the virus species was gathered from the GenBank. The information assembled was organized as a searchable database using MySQL and PHP. In the home page of the database, a general outline about viruses, their history, taxonomy, transmission and management are provided. An alphabetical index of all virus species reported from India is also given in the home page along with their corresponding genera and family names. For each virus species entry, a brief introduction about the virus, its particle morphology, transmission, its natural host range, symptomatology and detection methods are given. Key references and all available sequences (both complete and partial) of each of the virus species are also provided. Selected sequences can be directly downloaded from the website in FASTA format for downstream analysis. Provision for BLAST analysis (Viro Blast) provided in the database will help researchers in quick identification of their samples.

References





DOI: https://doi.org/10.18520/cs%2Fv113%2Fi01%2F27-29