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Computational Approach for Structure and Functionality Search for Hypothetical Proteins in Mycobacterium Leprae


Affiliations
1 Applied Aquatic Ecosystem Division, National Environmental Engineering Research Institute, Nehru Marg, Nagpur-440020, India
     

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Mycobacterium leprae Br4923 the causative agent of leprosy is one of the most puzzling and complex microorganism due to its gene decaying property and presence of large number of pseudogenes. The proper treatment of leprosy is not yet possible due to its drug resistance mechanism and uncultivable nature on culture media. The present work deals with the prediction of structure and function of hypothetical proteins in M. Leprae by the use of computational methods and bioinformatics. The prediction of orthologous sequence in biological sequence databases, assist in classification of 180 hypothetical protein sequences in their respective protein family by the use of web tools (CDD-BLAST, INTERPROSCAN, PFAM and COGs). The 3-D structures of the 160 functionally resolved hypothetical proteins were constructed using PS2 server (Protein structure prediction server). The generated data can prove useful in the prediction of evolutionary relationship of Mycobacterium leprae with those of other related Mycobacterium species. It may also assist in the designing of novel drug to treat leprosy.

Keywords

Gene Decay, Pseudogenes, Uncultivable, Web Tools, Evolutionary Relationship.
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  • Computational Approach for Structure and Functionality Search for Hypothetical Proteins in Mycobacterium Leprae

Abstract Views: 279  |  PDF Views: 4

Authors

Swapnil G. Sanmukh
Applied Aquatic Ecosystem Division, National Environmental Engineering Research Institute, Nehru Marg, Nagpur-440020, India
Waman N. Paunikar
Applied Aquatic Ecosystem Division, National Environmental Engineering Research Institute, Nehru Marg, Nagpur-440020, India
Tarun K. Ghosh
Applied Aquatic Ecosystem Division, National Environmental Engineering Research Institute, Nehru Marg, Nagpur-440020, India

Abstract


Mycobacterium leprae Br4923 the causative agent of leprosy is one of the most puzzling and complex microorganism due to its gene decaying property and presence of large number of pseudogenes. The proper treatment of leprosy is not yet possible due to its drug resistance mechanism and uncultivable nature on culture media. The present work deals with the prediction of structure and function of hypothetical proteins in M. Leprae by the use of computational methods and bioinformatics. The prediction of orthologous sequence in biological sequence databases, assist in classification of 180 hypothetical protein sequences in their respective protein family by the use of web tools (CDD-BLAST, INTERPROSCAN, PFAM and COGs). The 3-D structures of the 160 functionally resolved hypothetical proteins were constructed using PS2 server (Protein structure prediction server). The generated data can prove useful in the prediction of evolutionary relationship of Mycobacterium leprae with those of other related Mycobacterium species. It may also assist in the designing of novel drug to treat leprosy.

Keywords


Gene Decay, Pseudogenes, Uncultivable, Web Tools, Evolutionary Relationship.