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Diagnostic Utility of RT-PCR in Extra-Pulmonary (Pleural and Peritoneal) Tuberculosis


Affiliations
1 Sher-i-Kashmir Institute of Medical Sciences, Srinagar, Jammu and Kashmir, India
2 Sher-i-Kashmir Institute of Medical Sciences, Srinagar, Jammu and Kashmir, Pin code: 190001, India
     

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Background: Conventional diagnostic tests for pleural and peritoneal TB include microscopy, culture and histopathological examination. These have recognised limitations for clinical use due to the paucity of acid-fast Bacilli in these specimens and the invasive nature of sample collection for histopathological examination. We carried our study to evaluate the efficacy of REAL-TIME PCR (RT-PCR) for the diagnosis of TB in pleural effusion and Ascites. We also compared the efficiency of RTPCR with a conventional technique for the diagnosis of Peritoneal and Pleural TB. In addition, the efficacy of RT-PCR with conventional PCR was also studied.

Methods: A total of 90 patients with pleural effusion and/or ascites having clinically suspected TB were studied. They were divided into two groups. Group 1 or cases included diagnosed Tubercular Pleural/ Ascitic Fluid (Pleural Fluid ADA > 70 IU/L/ Ascitic Fluid ADA >30 IU/L/ Fluid AFB stain and Histology i.e., Granulomas from biopsy/ Bronchoscopy / Laparoscopy). Group 2 or controls included non-Tubercular lymphocytic exudative Pleural/Ascitic fluids. RT PCR MTB-SYBR GREEN AND PCR were carried in all study participants while RT-PCR by TAQMAN was done in 25 randomly selected participants (19 from group 1/ cases and 6 from group2/controls).

Results: We found that for tubercular pleural effusion, RT-PCR MTB-SYBR GREEN had a sensitivity of 51.2% and a specificity of 100 percent whereas for tubercular ascites it was 50 percent and 100 percent, respectively. The combined sensitivity and specificity for RTPCR-SYBR GREEN in our study (Pleural TB + peritoneal TB) was 50.9 % and 100 % respectively. The sensitivity and specificity calculated for RT PCR TAQMAN PROBE in diagnosing extrapulmonary TB was 68.4% and 100% respectively.

Conclusion: RT-PCR for extrapulmonary TB (pleural and peritoneal) had better specificity when compared to conventional methods, and also better sensitivity than most of the conventional methods except for ADA and Mantoux, which had low specificity as compared to RT-PCR. RT-PCR by Taqman technique showed better sensitivity and specificity when compared to conventional techniques including conventional PCR and RT-PCR by Sybr Green assay. A decision to treat pleural & peritoneal TB should not depend entirely on RT-PCR result.


Keywords

Conventional PCR, RT-PCR by Sybr Green Assay, RT-PCR by Taqman, Sensitivity and Specificity, Extrapulmonary TB.
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  • American Thoracic Society Workshop (1997). Rapid diagnostic tests for tuberculosis. What is the appropriate use? Am J RespirCrit Care Med. 155:1804-1814.

  • Light RW. Useful tests on the pleural fluid in the management of patients with pleural effusions. CurrOpinPulm Med 1999; 5:245–249.

  • Villena V, Rebollo MJ, Aguado JM, et al. Polymerase chain reaction for the diagnosis of pleural tuberculosis in immunocompromised and immunocompetentpatients. Clin Infect Dis 1998.

  • Reechaipichitkul W, Lulitanond V, Sungkeeree S, Patjanasoontorn B. Rapid diagnosis of tuberculous pleural effusion using polymerase chain reaction. Southeast Asian J Trop Med Public Health. 2000 Sep;31(3):509-14.

  • Kulkarni S, Vyas S, Supe A, Kadival G. Use of polymerase chain reaction in the diagnosis of abdominal tuberculosis. J Gastroenterol Hepatol. 2006 May;21(5):819-23.

  • Miller MB, Popowitch EB, Backlund MG, Ager EPC. Performance of Xpert MTB/RIF RUO Assay and IS6110 Real-Time PCR for Mycobacterium tuberculosis Detection in Clinical Samples. Journal of Clinical Microbiology. 2011;49(10):3458-3462.

  • Franciele Rosso, Candice T Michelon, Rosa D Sperhacke, Mirela Verza, Liliane Olival, Marcus B Conde, Renata L Guerra, ArnaldoZaha and Maria LR Rossetti, Evaluation of real-time PCR of patient pleural effusion for diagnosis of tuberculosis, Rosso et al. BMC Research Notes 2011, 4:279

  • L. Salgado Floresa, A. Hernández Solís a, A. Escobar Gutiérrezb, L. Criales Cortés Joséc, I. Cortés Ortizb, H. González Gonzáleza, E. Luis Martíneza, R. Cicero Sabidod Peritoneal tuberculosis: A persistent diagnostic dilemma, use complete diagnostic methods Rev Med Hosp Gen Méx. 2015;78(2):55-61

  • Bloemberg GV, Voit A, Ritter C, Deggim V, Böttger EC. Evaluation of Cobas TaqMan MTB for direct detection of the Mycobacterium tuberculosis complex in comparison with Cobas Amplicor MTB. J Clin Microbiol. 2013 Jul;51(7):2112-7.

  • Causse M, Ruiz P, Gutierrez-Aroca JB, Casal M. 2011. Comparison of two molecular methods for rapid diagnosis of extrapulmonary tuberculosis. J. Clin. Microbiol. 49:3065–3067.


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  • Diagnostic Utility of RT-PCR in Extra-Pulmonary (Pleural and Peritoneal) Tuberculosis

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Authors

Talib Khan
Sher-i-Kashmir Institute of Medical Sciences, Srinagar, Jammu and Kashmir, India
Tahir Majeed
Sher-i-Kashmir Institute of Medical Sciences, Srinagar, Jammu and Kashmir, Pin code: 190001, India
Dil Afroze
Sher-i-Kashmir Institute of Medical Sciences, Srinagar, Jammu and Kashmir, India

Abstract


Background: Conventional diagnostic tests for pleural and peritoneal TB include microscopy, culture and histopathological examination. These have recognised limitations for clinical use due to the paucity of acid-fast Bacilli in these specimens and the invasive nature of sample collection for histopathological examination. We carried our study to evaluate the efficacy of REAL-TIME PCR (RT-PCR) for the diagnosis of TB in pleural effusion and Ascites. We also compared the efficiency of RTPCR with a conventional technique for the diagnosis of Peritoneal and Pleural TB. In addition, the efficacy of RT-PCR with conventional PCR was also studied.

Methods: A total of 90 patients with pleural effusion and/or ascites having clinically suspected TB were studied. They were divided into two groups. Group 1 or cases included diagnosed Tubercular Pleural/ Ascitic Fluid (Pleural Fluid ADA > 70 IU/L/ Ascitic Fluid ADA >30 IU/L/ Fluid AFB stain and Histology i.e., Granulomas from biopsy/ Bronchoscopy / Laparoscopy). Group 2 or controls included non-Tubercular lymphocytic exudative Pleural/Ascitic fluids. RT PCR MTB-SYBR GREEN AND PCR were carried in all study participants while RT-PCR by TAQMAN was done in 25 randomly selected participants (19 from group 1/ cases and 6 from group2/controls).

Results: We found that for tubercular pleural effusion, RT-PCR MTB-SYBR GREEN had a sensitivity of 51.2% and a specificity of 100 percent whereas for tubercular ascites it was 50 percent and 100 percent, respectively. The combined sensitivity and specificity for RTPCR-SYBR GREEN in our study (Pleural TB + peritoneal TB) was 50.9 % and 100 % respectively. The sensitivity and specificity calculated for RT PCR TAQMAN PROBE in diagnosing extrapulmonary TB was 68.4% and 100% respectively.

Conclusion: RT-PCR for extrapulmonary TB (pleural and peritoneal) had better specificity when compared to conventional methods, and also better sensitivity than most of the conventional methods except for ADA and Mantoux, which had low specificity as compared to RT-PCR. RT-PCR by Taqman technique showed better sensitivity and specificity when compared to conventional techniques including conventional PCR and RT-PCR by Sybr Green assay. A decision to treat pleural & peritoneal TB should not depend entirely on RT-PCR result.


Keywords


Conventional PCR, RT-PCR by Sybr Green Assay, RT-PCR by Taqman, Sensitivity and Specificity, Extrapulmonary TB.

References