Journal of Environment and Sociobiology

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Rhizospheric Metagenome Dataset of the Terrestrial Mangrove Nypa fruticans Wurmb. from Indian Sunderbans


Affiliations
1 Department of Botany, Sister Nibedita Government General Degree College for Girls, 20B, Judges Court Road, Kolkata-700027, West Bengal, India
2 Department of Biotechnology, St. Xavier’s College (Autonomous), Kolkata-700016, India
     

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Microorganisms that colonize the rhizosphere help plants to cope with infection, toxic compounds, and other sources of stress. This work attempts to analyse the rhizospheric abundance of microorganisms around Nypa fruticans Wurmb. to characterise the optimum microbial content for proper survivability of the mangrove species. This is the first study which reports Nypa fruticans Wurmb. rhizospheric association of microorganisms.

Keywords

Nypa Fruticans, Indian Sunderbans, Rhizospheric Metagenome.
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  • Alzubaidy, H., Essack, M., Malas, T. B., Bokhari, A., Motwalli, O., Kamanu, F. K., Jamhor, S. A., Mokhtar, N. A., Antunes, A., Simões, M. F. and Alam, I, Bougouffa, S., Laffi, F. F. Balic, V. B. and Archar J. A., 2016. Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea. Gene, 576(2): 626-636.

  • Ellison, J., Koedam, N. E., Wang, Y., Primavera, J., Jin Eong, O., Wan-Hong Yong, J. & Ngoc Nam, V. 2010. Nypa fruticans. The IUCN Red List of Threatened Species 2010: http://dx.doi.org/10.2305/IUCN.UK.2010-2.RLTS. T178800A7610085.en

  • Ganguli, S., Rahaman, S., Bera, A. R., Vishal, V., Malik, S., Roopalakshmi, K. and Singh, P. K., 2017. Rhizospheric metagenome of the terrestrial mangrove fern Acrostichum from Indian Sunderbans. Genom. Data, 14: 53-55.

  • Gopal, B. and Chauhan, M., 2006. Biodiversity and its conservation in the Sundarban mangrove ecosystem. Aquat. Sci., 68(3): 338-354. https://metagenomics.sequentiabiotech.com

  • [https://store.nanoporetech.com/media/wysiwyg/Example_Direct_cDNA_Sequencing_protocol.pdf] Direct cDNA sequencing for the MiniONTM device using SQKDCS108. Nanopore. Tech., Oxford, pp. 1-4.

  • Ragavan, Priyadarshini. 2018. Status of Indian Mangroves. Oceanography & Fisheries Open access Journal. 7. 10.19080/OFOAJ.2018.07.555718.

  • Theerawitaya, C., Samphumphaung, T., Cha-um, S., Yamada, N. and Takabe, T., 2014. Responses of Nipa palm (Nypa fruticans) seedlings, a mangrove species, to salt stress in pot culture. Flora, 209(10): 597-603.


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  • Rhizospheric Metagenome Dataset of the Terrestrial Mangrove Nypa fruticans Wurmb. from Indian Sunderbans

Abstract Views: 347  |  PDF Views: 1

Authors

Wrick Chakraborty
Department of Botany, Sister Nibedita Government General Degree College for Girls, 20B, Judges Court Road, Kolkata-700027, West Bengal, India
Sayak Ganguli
Department of Biotechnology, St. Xavier’s College (Autonomous), Kolkata-700016, India
Paramita Nandy (Datta)
Department of Botany, Sister Nibedita Government General Degree College for Girls, 20B, Judges Court Road, Kolkata-700027, West Bengal, India

Abstract


Microorganisms that colonize the rhizosphere help plants to cope with infection, toxic compounds, and other sources of stress. This work attempts to analyse the rhizospheric abundance of microorganisms around Nypa fruticans Wurmb. to characterise the optimum microbial content for proper survivability of the mangrove species. This is the first study which reports Nypa fruticans Wurmb. rhizospheric association of microorganisms.

Keywords


Nypa Fruticans, Indian Sunderbans, Rhizospheric Metagenome.

References