Open Access
Subscription Access
Open Access
Subscription Access
Minemicronet:A Database for Visualization and Exploration of Mining Bacterial Communities
Subscribe/Renew Journal
Biomining operations are used industrially to extract metal of interest from low grade ores. The time required in these operations is relatively large as different microorganisms take different amount of time in bioleaching or bio oxidation. Extensive research is going in the field of metallurgy and biotechnology to create new strains, by genetic manipulation, which give better yield and take shorter time. This is resulting in a lot of dispersed data around the globe at various locations in the form of literature hard copies and web material. Hence, we try is to create a freely accessible, informative and cumulated data repository of mining bacteria, from which the data related to any kind of mining microorganism can be extracted and any new data related to existing or new strains can be uploaded so that a uniform informational repository is formed. Since, the bacterial groups are the most researched groups amongst the plethora of mining microorganisms, we first aimed at creating a database for the bacterial group, which can further be extended to other groups as well.
Keywords
Biomining, Data Source, Database Design, Data Repository, Bioleaching.
Subscription
Login to verify subscription
User
Font Size
Information
- Devasia P, Natarajan KA. Bacterial Leaching-Biotechnology in the Mining Industry. Resonance. 2004; 8 (9): 70-76.
- Bosecker K. Bioleaching: Metal Solubilization by Microorganisms. FEMS Microbiology Reviews. 1997;(20):591-604.
- Brandl H. and H.-J. Rehm and Reed G. Editots. Microbial Leaching of Metals. Biotechnology: Special Processes. 2008; 2nded: pp. 191-217.
- Sugio T, Domatsu C, Munakata O, Tano T, and Imai K. Role of Ferric Reducing System in Sulfur Oxidation of Thiobacillus Ferrooxidans. Applied and Environmental Microbiology. 1985;(49): 1401-1406.
- Baker BJ, Banfield JF. Microbial Communities in Acid Mine Drainage. FEMS Microbiology Ecology. 2003; 44(2):139-52.
- Fowler TA, Crundwell FK. Leaching of Zinc Sulfide by Thiobacillus ferrooxidans: Experiments with a Controlled Redox Potential Indicate no Direct Bacterial Mechanism. Applied and Environmental Microbiology. 1998; 64(10): 3570-3575.
- Brierley CL. Microbiological Mining. Scientific American. 1982; 247(2): 44-53.
- Jayakaran P, Haritha V, Rajan AP, Dass JFP. Evolutionary Analysis of Unique Membrane Protein Gene Family of Acidithiobacillus ferrooxidans. International Journal of Research in Pharmaceutical Sciences. 2017; 8(2): 135-146.
- De Wulf-Durand P, Bryant LJ, Sly LI. PCR-Mediated Detection of Acidophilic, Bioleaching-Associated Bacteria. Applied and Environmental Microbiology.1997; 63(7): 2944-2948.
- MohanaR, Vaishnavi VK, Nathiya T, Rajni K and Rajan AP. Study of Membrane fluidity on Acidithibacillus Ferrooxidans grown in indirect (Ferrous Sulphate and Sodium Thiosulphate) and Direct (Sulfur) Substrates. Asian Journal of Microbiology, Biotechnology and Environmental Sciences Paper. 2015; 17: 127-132.
- Masaki Y, Tsutsumi K, Hirano SI, Okibe N. Microbial Community Profiling of the Chinoike Jigoku (“Blood Pond Hell”) Hot Spring in Beppu, Japan: Isolation and Characterization of Fe (III)-Reducing Sulfolobus sp. strain GA1. Research in Microbiology. 2016;167(7):595-603.
- Yang Y, Ren G, Peng Z, Wang X. Bacterial Diversity Analysis of Coal Mine Drainage Enriched by Different Energy Sources. Energy and Fuels. 2013; 27(9): 5552-5558.
- Reddy AR, Venkateswarulu TC, Indira M, Narayana AV, Lohita TN and Sriharsha M. Identification of Membrane Drug Targets by Subtractive Genomic Approach in Mycoplasma Pneumonia. Research Journal of Pharmacy and Technology. 2015; 8(9): 1209.
- Sakharkar KR, Sakharkar MK, Chow VT. A Novel Genomics Approach for the Identification of Drug Targets in Pathogens, with Special Reference to Pseudomonas aeruginosa. Research Journal of Pharmacy and Technology. 2004; (4): 355-360.
- Dutta A, Singh SK, Ghosh P, Mukherjee R, Mitter S. In Silico Identification of Potential Therapeutic Targets in the Human Pathogen Helicobacter Pylori. Research Journal of Pharmacy and Technology. 2006; (6): 43-47.
- Reddy AR, Venkateswarulu TC, Indira M, Narayana AV, Lohita TN and Sriharsha M. Identification of Membrane Drug Targets by Subtractive Genomic Approach in Mycoplasma Pneumonia. Research Journal of Pharmacy and Technology. 2015; (9), 1209.
- Swetha RG, Anbarasu A. A Review on Infectious Diseases and their Importance in Developing Biological Databases. Research Journal of Pharmacy and Technology. 2016; 9(5): 621-624.
- Zhu C, Miller M, Marpaka S, Vaysberg P, Rühlemann M C, Wu G, Heinsen FA, Tempel M, Zhao L, Lieb W, Franke A. Functional Sequencing Read Annotation for High Precision Microbiome Analysis. Nucleic Acids Research. 2017; 46(4): 23-23.
- Xie Y, Wei Y, Shen Y, Li X, Zhou H, Tai C, Deng Z and Ou HY. TADB 2.0: An Updated Database of Bacterial Type II toxin–antitoxin Loci. Nucleic Acids Research. 2017;46(D1): D749-D753.
- Jong de, Heel A van, Kok AJ, J and Kuipers OP. BAGEL2: Mining for Bacteriocins in Genomic Data. Nucleic Acids Research.2010; 38(W6): 47-W651.
- Oliveira FS, Brestelli J, Cade S, Zheng J, Iodice J, Fischer S, Aurrecoechea C, Kissinger JC, Brunk BP, Stoeckert Jr, C J, Fernandes G R. MicrobiomeDB: A Systems Biology Platform for Integrating, Mining and Analyzing Microbiome Experiments. Nucleic Acids Research. 2017; 46(D1): D684-D691.
- Lodish H, Berk A, Zipursky SL. The Three Roles of RNA in Protein Synthesis. Molecular Cell Biology. New York: W. H. Freeman. 2000; 4th edition: Section 4.4.
- Tiwari S and Prem Rajan A. How are Biofilm Formed on Biological Implants? A Mystery Solved. International Journal of Chemtech Applications. 2013; 2 (1): 161- 172.
- Vidya VS, Shreenidhi R, Ishita Kriti, Anand Prem Rajan. Novel Software for the Study of Codon Ina 16srna Sequence and Decoding The Translated Amino Acid Quantum. International Journal of Applied Environmental Sciences. 2015; (10): 2067-2076.
- Tokiwa Y, Calabia BP, Ugwu CU, Aiba S. Biodegradability of Plastics. International Journal of Molecular Sciences. 2009; (10): 3722-3742.
- Anjana C, Aparna K P, Priyanka A, Aarathy M P, Sabahat F, Badari, Anand Prem Rajan. An Assessment of Biofilm on Automatic Teller Machines (ATM) for the Pathogenic Microorganisms. International Journal of Chemtech Applications. 2013; 2(1): 71-76.
- Devi SS, Sreenivasulu Y. and Rao KB. Talaromyces Verruculosus, a Novel Marine Fungi as a Potent Polyhydroxybutyrate Degrader. Research Journal of Pharmacy and Technology. 2014; 7(4): 433.
- Sasikumar C, Mohana SJ, Yasodha S. Scrutiny of Antagonistic Microbial and Cytotoxic Promises of Fungal Endophyte Secluded from Pisonia grandis R. Br. Research Journal of Pharmacy and Technology. 2017; 10(3): 647.
- PremsinghJ, RajanA P. Ecoinformatics – A Revolutionary Bioinformatics. International Journal of Research in Pharmaceutical Sciences. 2017; 8(2):239-246.
- Gupta A, Dutta A, Sarkar J, Paul D, Panigrahi MK, Sar P. Metagenomic Exploration of Microbial Community in Mine Tailings of Malanjkhand Copper Project, India. Genomics data. 2017; (12):11-13.
- Deshpande AS, Kumari R and Prem Rajan A. A Delve into the Exploration of Potential Bacterial Extremophiles Used for Metal Recovery. Global Journal of Environmental Science and Management. 2018; 4(3): 373-386.
- Delisle M. Mastering phpMyAdmin 3.1 for Effective MySQL Management. Packt Publishing Ltd. 2009; 13.
Abstract Views: 203
PDF Views: 0