Open Access Open Access  Restricted Access Subscription Access
Open Access Open Access Open Access  Restricted Access Restricted Access Subscription Access

Isolation and Characterization of Microbial Diversity of Soil of Dhanbad Coal Mines using Molecular Approach


Affiliations
1 School of Bioengineering and Biosciences, Lovely Professional University, Punjab-144411, India
     

   Subscribe/Renew Journal


Soil is the richest ecosystem there is, as far as the diversity and populations of microorganisms is concerned. It is known that there could be over ten billion microbes per gram of soil, making soil the ideal ecosystem for mining different genes, ORFs etc. Microbial Diversity forms the lifeline of an ecosystem, interfering, regulating and participating in the biogeochemical activities therein. The present study was conducted to identify key extremophilic species residing in the coal mines of Dhanbad plateau in Bihar, India. Dhanbad plateau soil presents a unique niche, rich in coal and minerals. Soil from the coal mines was analysed through metagenomic as well as culture-dependent approach to enlist the micro-organisms native to the place. The culturable fraction lead to the identification of Klebsiella spp, Enterobacteriaceae, Serratia marcescens, and Providencia spp.

Keywords

Microbial Diversity, Molecular techniques, 16S rRNA genes, Dhanbad Plateau, Metagenomics.
Subscription Login to verify subscription
User
Notifications
Font Size


  • Schopf JW. Fossil evidence of Archaean life. Philosophical Transactions of the Royal Society B: Biological Sciences. 2006 Jun 29;361(1470):869-85.
  • Barea JM, Pozo MJ, Azcon R, Azcon-Aguilar C. Microbial co-operation in the rhizosphere. Journal of Experimental Botany. 2005 Jul 1;56(417):1761-78.
  • Kallmeyer J, Pockalny R, Adhikari RR, Smith DC, D’ Hondt S. Global distribution of microbial abundance and biomass in subseafloor sediment. Proceedings of the National Academy of Sciences. 2012 Oct 2;109(40):16213-6.
  • Riesenfeld CS, Schloss PD, Handelsman J. Metagenomics: genomic analysis of microbial communities. Annual Review of Genetics. 2004 Dec 15; 38:525-52.
  • Bhatia A, Rajpal A, Madan S, Kazmi AA. Techniques to analyze microbial diversity during composting—A mini review. Indian Journal of Biotechnology. 2015 Jan 1; 14: 19-25.
  • Plateau CN, River D, River S, River B, Hill P. definition-Chota Nagpur Plateau.
  • Gupta AK, Paul B. Ecorestoration of Coal Mine Overburden Dump to Prevent Environmental Degradation: A Review. Research Journal of Environmental Sciences. 2015 Oct 1;9(7):307.
  • Li Y, Wen H, Chen L, Yin T. Succession of bacterial community structure and diversity in soil along a chronosequence of reclamation and re-vegetation on coal mine spoils in China. PloS one. 2014 Dec 11;9(12):e115024.
  • Ettema CH. Soil Microorganisms and Plant Growth. NS Subba Rao, 1995. Science Publishers, New Hampshire.
  • Kirk JL, Beaudette LA, Hart M, Moutoglis P, Klironomos JN, Lee H, Trevors JT. Methods of studying soil microbial diversity. Journal of Microbiological Methods. 2004 Aug 31;58(2):169-88
  • Klute A, Dirksen C. Hydraulic conductivity and diffusivity: laboratory methods. Methods of soil analysis: part 1—physical and mineralogical methods. 1986 Jan 1:687-734.
  • Zhou J, Bruns MA, Tiedje JM. DNA recovery from soils of diverse composition. Applied and Environmental Microbiology. 1996 Feb 1;62(2):316-22.
  • Yeates C, Gillings MR. Rapid purification of DNA from soil for molecular biodiversity analysis. Letters in Applied Microbiology. 1998 Jul 1;27(1):49-53.
  • Mullis KB, Ferré F, Gibbs RA. The polymerase chain reaction. Boston, MA. 1994.Ausubel FM. Current Protocols in Molecular Biology. 1987.
  • Zabransky RJ, Hall JW, Day FE, Needham GM. Klebsiella, Enterobacter, and Serratia: biochemical differentiation and susceptibility to ampicillin and three cephalosporin derivatives. Applied Microbiology. 1969 Aug 1;18(2):198-203.
  • Maslow JN, Brecher SM, Adams KS, Durbin A, Loring S, Arbeit RD. Relationship between indole production and differentiation of Klebsiella species: indole-positive and-negative isolates of Klebsiella determined to be clonal. Journal of Clinical Microbiology. 1993 Aug 1;31(8):2000-3.
  • Alexander SK, Strete D. Microbiology: a photographic atlas for the laboratory. Benjamin-Cummings Publishing Company; 2001.
  • Brenner DJ, O’Hara CM, Grimont PA, Janda JM, Falsen E, Aldova E, Ageron E, Schindler J, Abbott SL, Steigerwalt AG. Biochemical Identification of Citrobacter Species Defined by DNA Hybridization and Description of Citrobacter gillenii sp. nov. (Formerly Citrobacter Genomospecies 10) and Citrobacter murliniae sp. nov.(Formerly Citrobacter Genomospecies 11). Journal of Clinical Microbiology. 1999 Aug 1;37(8):2619-24.
  • Bachoon, DS., and Wendy AD. Microbiology Laboratory Manual. Ed. Michael Stranz. Mason, OH: Cengage Learning, 2008. Exercise 8, "Selective and Differential Media for Isolation" Print.
  • Swapna P, Madhavi AB, Lakshmi VV. Biodiversity of gram positive bacteria in marine water bodies and their seasonal variation. International Journal of Scientific and Engineering Research. 2015 Feb 1; 6(2): 182-187
  • Janda JM, Abbott SL, Cheung WK, Hanson DF. Biochemical identification of citrobacteria in the clinical laboratory. Journal of Clinical Microbiology. 1994 Aug 1;32(8):1850-4.
  • Hara CM, Brenne FW, Miller JM. Classification, Identification, and Clinical Significance of Proteus, Providencia, and Morganella. Clinical Microbiology Reviews. 2000; 13(4); 534-546.

Abstract Views: 211

PDF Views: 0




  • Isolation and Characterization of Microbial Diversity of Soil of Dhanbad Coal Mines using Molecular Approach

Abstract Views: 211  |  PDF Views: 0

Authors

Prince Anand
School of Bioengineering and Biosciences, Lovely Professional University, Punjab-144411, India
Reena Singh Chopra
School of Bioengineering and Biosciences, Lovely Professional University, Punjab-144411, India
Daljeet Singh Dhanjal
School of Bioengineering and Biosciences, Lovely Professional University, Punjab-144411, India
Chirag Chopra
School of Bioengineering and Biosciences, Lovely Professional University, Punjab-144411, India

Abstract


Soil is the richest ecosystem there is, as far as the diversity and populations of microorganisms is concerned. It is known that there could be over ten billion microbes per gram of soil, making soil the ideal ecosystem for mining different genes, ORFs etc. Microbial Diversity forms the lifeline of an ecosystem, interfering, regulating and participating in the biogeochemical activities therein. The present study was conducted to identify key extremophilic species residing in the coal mines of Dhanbad plateau in Bihar, India. Dhanbad plateau soil presents a unique niche, rich in coal and minerals. Soil from the coal mines was analysed through metagenomic as well as culture-dependent approach to enlist the micro-organisms native to the place. The culturable fraction lead to the identification of Klebsiella spp, Enterobacteriaceae, Serratia marcescens, and Providencia spp.

Keywords


Microbial Diversity, Molecular techniques, 16S rRNA genes, Dhanbad Plateau, Metagenomics.

References